Through GIS technology, using the MCR-FLUS-Markov model, and the urban agglomeration in central Yunnan was taken as an example investigation of the optimized allocation of a territory spatial pattern to put forward a method of optimization of territory spatial patterns based on an ecological security patterns. The layout of the territory spatial pattern in 2030 was studied under the following four modes: the expansion of the living space, development of the production space, protection of ecological space and comprehensive optimization scenario, and finally an optimization of the territorial spatial pattern of the study area was formed as coordinated living-production-ecological space. The results revealed that: using the MCR and the cumulative cost distance model to construct the ecological security pattern of urban agglomeration, five functional zones of ecological security patterns were formed, which were as follows: the core area of ecological space protection, edge area of ecological space protection, key area of production space development, edge area of production space development and concentration area of living space expansion. Coupled with MCR-FLUS-Markov model, optimal allocation results for living-production-ecological space were obtained for four scenarios in 2030, and the focus of the various scenario simulations set by the research were different. According to their dominant functions and multi-functional natures of the territory space, the optimized layout of the living-production-ecological space under the comprehensive scenario plan for the urban agglomeration in central Yunnan in 2030 were divided into living, production, ecological, living-production, living-ecological, production-ecological, living-production-ecological spaces, with the area of the production-ecological and ecological space as the smallest and largest, respectively. It was believed that a comprehensive scenario plan based on the coordination of the living-production-ecological space would be more reasonable, and the other three scenarios can be used to supplement and adjust the implementation of the fundamental, comprehensive scenario plan.